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Code

Some of the code that I developed and/or contributed to. 🐱‍💻

GEMDAT

Python toolkit for molecular dynamics analysis | 7

duqtools

Dynamic uncertainty quantification for Tokamak reactor simulations modelling | 8

dianna

Deep Insight And Neural Network Analysis | 29

REL

REL: Radboud Entity Linker | 279

nanomesh

Python workflow tool for generating meshes from 2D and 3D image data | 19

ESMValTool

ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP | 190

ESMValCore

ESMValCore: A community tool for pre-processing data from Earth system models in CMIP and running analysis scripts. | 35

instamatic

Python program for automated electron diffraction data collection | 46

edtools

Collection of tools for automated processing and clustering of electron diffraction data | 10

InsteaDMatic

A DigitalMicrograph script to collect 3D electron diffraction data with continuous rotation | 9

pyserialem

Python module to read/write SerialEM navigator files. | 9

nbcheckorder

Pre-commit hook to check order of Jupyter notebook cells | 2

FOCUS package including DLS-76 and KRIBER for structure determination of zeolites | 6

lines

A program for plotting powder diffraction patterns and background subtraction | 5